Go-Parts
Cart 0
Your cart is empty
Add an item to see it appear here.
Wrenchy
Go-Parts Garage
Expert guides for diagnosing, troubleshooting, and replacing auto parts Expert guides for diagnosing and replacing auto parts
Browse All →

2017-2021 Honda Clarity Fuel Cell Intercooler: A Guide to the FCEV-Specific Component

This guide covers the unique water-to-air intercooler for the Clarity Fuel Cell, including failure symptoms, compatibility warnings, and related system recalls.

6 minutes to read 2017-2021 Honda Clarity
Difficulty
5/5
Est. Time
4 hrs
DIY Doable?
🔧 Shop
Shop Labor
$600 - $900
Used OEM Price
$350 - $600
⚠️ Drivable, but... — Yes, but there is a risk of sudden power loss, which could be dangerous while driving. The vehicle should be serviced as soon as possible.
Key Takeaways
  • This intercooler is ONLY for the 2017-2021 Honda Clarity Fuel Cell (FCEV) model and will not fit the Plug-In Hybrid or Electric versions.
  • A sudden loss of power may not be the intercooler; check for open recalls on the Fuel Cell ECU software first, as this is a known issue with the same symptom.
  • Replacement is NOT a DIY task. It requires a certified technician due to the integration with dangerous high-voltage systems and the fuel cell stack.
  • Symptoms of failure include reduced power, hissing noises during acceleration, and potential leaks of the specialized FC insulating fluid.
The Honda Clarity Fuel Cell uses an electric air compressor to force ambient air into the fuel cell stack, which is essential for the chemical reaction that generates electricity. Before this compressed air enters the stack, it passes through a water-to-air intercooler. This device, also called a charge air cooler, uses the vehicle's specialized cooling system to lower the temperature of the compressed air. Cooler air is denser and contains more oxygen, which allows the fuel cell stack to operate more efficiently and produce power consistently. A properly functioning intercooler is critical for maintaining the performance and longevity of the entire fuel cell powertrain.

Critical Compatibility Warning: Fuel Cell Models Only

A 2017-2021 Honda Clarity Fuel Cell model, highlighting the unique front-end and powertrain configuration.
The Honda Clarity Fuel Cell (FCEV) features a unique powertrain that is distinct from the Plug-In Hybrid and Electric versions.

Warning: This intercooler and its related components are exclusively for the 2017-2021 Honda Clarity Fuel Cell (FCEV) models. It is NOT compatible with the more common Clarity Plug-In Hybrid (PHEV) or the Clarity Electric models. The Fuel Cell variant uses a complex powertrain with an air compressor that requires this specific water-to-air intercooler. Always verify your vehicle's trim level before purchasing.

Function of the Clarity Fuel Cell Intercooler

A technical cutaway of a water-to-air intercooler showing the internal passages for air and liquid coolant.
Unlike air-to-air units, this liquid-cooled intercooler uses FC insulating fluid to absorb heat from compressed air before it enters the fuel cell stack.

Unlike a traditional gasoline car, the Clarity Fuel Cell doesn't have an internal combustion engine. Instead, it has a fuel cell stack that combines hydrogen and oxygen to create electricity, with water as the only byproduct. To generate power efficiently, the stack needs a steady supply of highly compressed oxygen. An electric compressor, similar in principle to a turbocharger's compressor side, provides this pressurized air. However, compressing air makes it very hot. Hot air is less dense and can reduce the fuel cell's performance and lifespan.

This is where the intercooler comes in. It's a heat exchanger that cools the hot compressed air before it enters the fuel cell stack. The Clarity uses a liquid-cooled (or water-to-air) system, which is more compact and efficient than a typical air-to-air intercooler. This system circulates a special coolant, called FC insulating fluid, through the intercooler to absorb heat from the charge air, and then dissipates that heat through a separate, low-temperature radiator.

Common Symptoms of a Failing Intercooler

A side-by-side comparison of a clean, healthy intercooler core versus one with internal leaks and residue buildup.
A healthy intercooler (left) allows for maximum airflow and cooling, while a failed unit (right) can leak coolant internally, leading to power loss and potential stack damage.

While there are no widespread reported failures for this specific part due to the vehicle's rarity, a faulty intercooler on the Clarity Fuel Cell would exhibit symptoms similar to those in other vehicles with water-to-air intercoolers.

Reduced Power and Sluggish Acceleration

This is the most likely symptom. If the intercooler is leaking or clogged, it cannot cool the compressed air effectively. The vehicle's control unit may detect the higher intake air temperatures and reduce power output to protect the fuel cell stack, making the car feel sluggish. In severe cases, the system may enter a reduced power "limp mode".

Hissing or Whistling Noises

A distinct hissing or whooshing sound during acceleration is a classic sign of a boost leak. This noise is caused by compressed air escaping from a crack in the intercooler body, a damaged hose, or a loose connection. The sound will be most noticeable when the air compressor is working its hardest.

Visible Coolant Leaks

Since this is a water-to-air unit, it can develop internal or external coolant leaks. You might notice puddles of the specialized FC insulating fluid under the vehicle. A leak can also occur internally, allowing coolant to mix with the charge air, which could potentially damage the fuel cell stack over time.

Power System Warning Lights

A significant leak or clog in the intercooler system can trigger a fault in the powertrain control module. This would likely illuminate a general power system warning light on the dashboard, prompting the driver to seek service.

Known Issues, Recalls, and Service Bulletins

The dashboard of a Honda Clarity showing a power system warning light or a view of the electric water pump related to the cooling system recall.
While the intercooler itself hasn't been recalled, related components like the electric water pump (Recall 19V315000) are critical for maintaining the cooling system's integrity.

As of late 2023, there are no specific recalls or Technical Service Bulletins (TSBs) issued by Honda or the NHTSA for the intercooler itself on the 2017-2021 Clarity Fuel Cell. However, there are several important recalls for related systems that can cause similar symptoms.

Pro Tip: Before diagnosing a bad intercooler for a loss of power, have a Honda dealer check your vehicle's VIN for open recalls. A free software update could potentially solve the problem.

  • NHTSA Recall 19V315000: This recall addresses an electric water pump that can corrode and fail. This pump is a critical part of the fuel cell cooling system. Its failure can cause the fuel cell stack to shut down to prevent overheating, resulting in a sudden loss of power.
  • NHTSA Recalls 18V068000 & 18V921000: These recalls are for a software issue in the Fuel Cell Electronic Control Unit (FC-ECU). The software could misinterpret a normal voltage drop, causing it to shut down the fuel cell stack and lead to a loss of power.
  • TSB A19-006: This bulletin addresses accelerated deterioration of the fuel cell stack due to improper water discharge inside the unit. The corrective action is to replace the entire fuel cell stack.

Buying a Used Intercooler: What to Check

Finding a used intercooler for a Clarity Fuel Cell will be challenging due to the extremely low number of these vehicles produced. If you do find one, careful inspection is critical.

  1. Confirm the Source Vehicle: Absolutely confirm the part came from a 2017-2021 Honda Clarity Fuel Cell. Ask the seller for the VIN of the donor car if possible. A part from a Plug-In Hybrid will not work.
  2. Physical Inspection: Carefully inspect the entire unit for cracks, especially where plastic end tanks are joined to the aluminum core. Check for signs of corrosion on the aluminum. Look for bent or damaged cooling fins; while a few are acceptable, major damage can restrict airflow and cooling.
  3. Check for Leaks: Look for any signs of dried coolant residue (chalky white or colored stains) around hose connections or seams, which indicates a past leak.
  4. Internal Inspection: Look inside the inlet and outlet ports. The inside should be clean and dry. The presence of significant oily residue or coolant is a major red flag, indicating potential problems with other components on the donor vehicle.
  5. Verify Part Numbers: Match the part number on the unit to the known OEM numbers: 3G011-5WM-A00 or 3G660-5WM-A01.

Replacement Information

Warning: This is not a DIY-friendly repair. The Clarity Fuel Cell contains high-voltage electrical systems and a pressurized hydrogen fuel system. Servicing these components without proper training and equipment can be extremely dangerous. This job should only be performed by an authorized Honda Clarity Fuel Cell dealer technician.

  • Installation Difficulty: 5 out of 5 (Expert, Dealer-Only)
  • Reasoning: The intercooler is deeply integrated with the fuel cell stack and its cooling and air intake plumbing. Replacement requires draining the specialized FC insulating fluid, safely disabling the high-voltage system, and potentially removing parts of the fuel cell powertrain assembly.

Cost Comparison

Due to the specialized nature of this vehicle, aftermarket options are not available. Costs are high due to the low production volume.

Part Type Estimated Cost
New OEM $1,400 - $1,600
New Aftermarket Not Available
Used OEM $350 - $600 (if available)
Shop Labor (Specialist) $600 - $900

Frequently Asked Questions (FAQ)

Will this intercooler fit my 2019 Honda Clarity Plug-In Hybrid?

No. This part is only for the Fuel Cell (FCEV) model. The Plug-In Hybrid has a 1.5L gasoline engine and does not use this intercooler.

What's the difference between this and a regular intercooler?

This is a water-to-air intercooler that cools compressed air for a fuel cell stack, not an internal combustion engine. Many cars use air-to-air intercoolers, which are simpler but larger. The Clarity FCEV's system is more compact and uses a dedicated liquid cooling circuit.

My Clarity Fuel Cell lost power. Is the intercooler bad?

It's possible, but unlikely to be the first cause. A more common issue is a software problem with the Fuel Cell ECU, which was subject to a recall that causes the exact same symptom. Check with a Honda dealer to see if your vehicle has had the recall service performed before suspecting a hardware failure like the intercooler.

Can I replace the Clarity Fuel Cell intercooler myself?

No, this is strongly discouraged. The procedure involves working around high-voltage components and the fuel cell stack, which requires specialized training and tools to do safely. This repair should only be done by a technician certified to work on Honda's fuel cell vehicles.

Technical Specifications

OEM Part Numbers: 3G011-5WM-A00 3G0115WMA00 3G660-5WM-A01 3G6605WMA01

Water-to-air (liquid-cooled) charge air cooler for the fuel cell air compressor.

Wrenchy
Article researched & written by
Go-Parts' AI research assistant. Every article is backed by live web research, verified OEM data, and real technician knowledge — so you get accurate, up-to-date information you can trust.
Meet Wrenchy → Updated Jul 23, 2026

The information in this article is provided for general reference and educational purposes only. Vehicle specifications, procedures, and part compatibility can vary by production date, trim level, and region. Always consult your vehicle's factory service manual and verify part numbers before purchasing or performing repairs. Safety-critical components such as airbags, seat belts, and braking systems should be installed by a qualified professional.

Year Coverage
This article covers the Intercooler for:
  • Honda Clarity: 20172018201920202021
In this article
Critical Compatibility Warning: Fuel Cell Models Only
Jump to ▴

Email This Guide

We'll send you a link to this article so you can read it later or share it.

Added to cart · Part