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2006-2009 Honda S2000 ECM: Your Guide to Replacement and Immobilizer Programming

This guide covers the essential facts about the Engine Control Module (ECM) for the 2006-2009 Honda S2000, focusing on compatibility, mandatory programming, and common failure points.

6 minutes to read 2006-2009 Honda S2000
Difficulty
2/5
Est. Time
0.75 hrs
DIY Doable?
✅ Yes
Shop Labor
$100 - $200
Used OEM Price
$250 - $500
🚫 Do not drive — If the ECM has failed, the vehicle will likely not start or will be extremely unreliable and unsafe to drive due to stalling.
Key Takeaways
  • A replacement ECM for a 2006-2009 S2000 MUST be programmed to the car's immobilizer system, or the engine will not start.
  • Only ECMs with the prefix 37820-PZX are correct for this vehicle; units from earlier S2000s or other Honda/Acura models are not compatible.
  • The ECM is located in the passenger footwell, and failure is often caused by external factors like water damage or voltage spikes.
  • Before replacing the ECM, ensure a thorough diagnosis has ruled out simpler issues like bad sensors or wiring problems.
The Engine Control Module (ECM), also known as the Engine Control Unit (ECU), is the central computer for your 2006-2009 Honda S2000. It acts as the brain of the engine, processing information from dozens of sensors to make real-time decisions. The ECM controls critical functions like the air-fuel mixture, ignition timing, idle speed, and the VTEC variable valve timing system. For the 2006-2009 models, it also manages the Drive-By-Wire (DBW) electronic throttle. A properly functioning ECM is essential for engine performance, fuel economy, and emissions compliance.

Key Compatibility & Programming Facts for 2006-2009 S2000 ECMs

A 2006-2009 Honda S2000 Engine Control Module (ECM) showing the specific connector layout for drive-by-wire models.
The 2006-2009 S2000 ECM is unique to the drive-by-wire AP2 platform and cannot be swapped with earlier models or other Honda vehicles.

The Engine Control Module (ECM) for the 2006-2009 Honda S2000 is a model-specific part with critical programming requirements. Understanding these details is essential before purchasing a replacement.

  • Drive-By-Wire (DBW) Specific: These ECMs are only for 2006-2009 S2000s, which use an electronic throttle. They are not compatible with earlier 2000-2005 models that have a mechanical throttle cable.
  • Immobilizer System: The most crucial point for buyers is that the S2000 has a factory immobilizer system. A replacement ECM, whether new or used, will not start the car until it is programmed to recognize your existing keys. This is an anti-theft feature that links the ECM to the keys and the immobilizer unit.
  • Programming is Mandatory: After installation, the replacement ECM must be synchronized with the vehicle's immobilizer system. This procedure requires specialized tools. Options for programming include:
    • A Honda dealership using the Honda Diagnostic System (HDS).
    • Some independent repair shops or locksmiths with advanced diagnostic tools capable of Honda key programming.
    • Mail-in services that can clone the data from your original ECM to the replacement unit, making it plug-and-play.
  • VIN and Mileage: The vehicle's mileage is stored in the instrument cluster, not the ECM. The Vehicle Identification Number (VIN) is programmed into the ECM during the immobilizer pairing process.

Warning: Do not purchase an ECM from an Acura TSX or any other Honda model. Despite any database information suggesting compatibility, the S2000 ECM is unique to the S2000 platform and is not interchangeable with other vehicles.

Symptoms of a Failing S2000 ECM

An OBD2 diagnostic scanner displaying a 'No Communication' error message, indicating a potential ECM failure.
A 'No Communication' error on a diagnostic tool is a primary indicator that the ECM has failed or lost power.

While ECM failure is not extremely common, it can happen. Diagnosis should always begin by ruling out other potential causes like bad sensors, wiring issues, or fuel and ignition system faults. Symptoms of a failing ECM can include:

🎬 Watch this guide on common ECU failure signs and diagnosis
  • Check Engine Light: The check engine light may illuminate, often with codes related to internal module errors (P0600-P0610 range) or communication failures.
  • Engine Stalling or Misfiring: The engine may stall intermittently, run rough, or misfire without a clear cause from a specific cylinder.
  • No-Start Condition: The engine may crank but fail to start because the ECM is not commanding spark or fuel injection. In some cases, it may not crank at all.
  • No Communication: A diagnostic scan tool may be unable to communicate with the ECM, which is a strong indicator of a failed unit.
  • Inconsistent Performance: You might experience erratic behavior like poor acceleration, a sudden drop in fuel economy, or other unexplainable performance issues.

Common Causes of ECM Failure

A side-by-side comparison of a clean, healthy automotive circuit board versus one with green corrosion and water damage.
Water intrusion is a leading cause of S2000 ECM failure; note the contrast between a clean circuit board and one showing typical green oxidation from moisture.

ECM failures are often caused by external factors rather than simple old age. Common causes include:

  • Water Damage: The ECM is located in the passenger footwell area, under the carpet on the right-hand side. Leaks from the cowl, a poorly sealed windshield, or flooding can allow water to reach the module, causing short circuits and corrosion.
  • Voltage Spikes: Improper jump-starting (especially with reversed polarity), welding on the vehicle without disconnecting the ECM, or a faulty alternator can send a surge of voltage that damages the delicate internal electronics.
  • Internal Component Failure: Over time, vibrations and heat cycles can lead to cracked solder joints or the failure of electronic components like capacitors inside the ECM.

Buying a Used 2006-2009 S2000 ECM: What to Know

A used OEM ECM is often a reliable and cost-effective alternative to a brand-new unit. Here’s what to look for:

  • Match the Part Number: The most important step is to match the part number exactly. While some numbers supersede others, starting with an identical number is the safest bet.
  • Physical Inspection: Carefully inspect the used ECM before purchase. Look for any signs of corrosion on the casing or pins, which indicates water damage. Check for broken seals, pry marks, or any sign that the case has been opened, which could suggest a failed repair attempt.
  • Source Vehicle Information: If possible, get information about the vehicle the ECM came from. Knowing the year and mileage can be helpful, but the condition and part number are more important.
  • Plan for Programming: Remember that even a perfect used ECM will require programming. Factor the cost of a dealership visit or locksmith service into your total budget.

ECM Location and Replacement Overview

The passenger footwell of a Honda S2000 with the kick panel removed to reveal the ECM mounting location.
The S2000 ECM is tucked behind the kick panel in the passenger footwell; ensure the area is dry before installing a replacement.

The ECM is located in the passenger cabin, making it relatively easy to access.

  1. Location: The ECM is found in the passenger footwell. You will need to pull back the carpet on the right-hand side (near the firewall and transmission tunnel) to access the module and its mounting bolts. Some sources mention the driver's side kick panel, but for the 06-09 models, the passenger floor area is the correct location.
  2. Disconnect the Battery: Before starting any work, disconnect the negative terminal of the battery to prevent electrical damage.
  3. Remove Trim: You may need to remove the door sill plate and a kick panel to fully access the carpet and the ECM.
  4. Unbolt and Unplug: Unbolt the ECM from its bracket and carefully disconnect the wiring harness connectors. The connectors have locking tabs that must be depressed to release them.
  5. Installation and Programming: Installation is the reverse of removal. Once the new ECM is installed and the battery is reconnected, the vehicle will need to be towed or transported to a facility for immobilizer programming.

Pro Tip: Before concluding your ECM is bad, perform an ECU reset by pulling the 7.5A 'Backup' fuse from the interior fuse box for about 10 minutes. 🎬 Watch how to perform an S2000 ECU reset DIY This can sometimes resolve temporary glitches caused by sensor or power issues. However, this will not fix a physically failed ECM.

Cost Comparison: S2000 ECM Replacement

Part/ServiceEstimated Cost
New OEM (Honda Dealership)$1,200 - $1,800
Used OEM (Salvage/Online)$250 - $500
Remanufactured (with Programming Service)$500 - $650
Shop Labor (Installation)$100 - $200
Shop Labor (Programming)$150 - $300

Technical Specifications & Part Numbers

The following part numbers are associated with the 2006-2009 Honda S2000 ECM. Honda often updates part numbers; later numbers in the sequence typically supersede earlier ones. Part number 37820-PZX-A14 is a common replacement for many earlier versions.

Part NumberNotes
37820-PZX-A06Early 2006+ number
37820-PZX-A07Superceded
37820-PZX-A08Superceded
37820-PZX-A09Superceded
37820-PZX-A11Superceded by A14
37820-PZX-A122008 Model Year
37820-PZX-A13Superceded
37820-PZX-A14Current replacement for most 06-09 models
37820-PZX-A21Rewritable module, may be for specific trims like CR

Part Number Verification: The part numbers 37850-PZX-A01 and those listed for Acura are incorrect for this application. The correct prefix for a Honda S2000 engine computer is 37820-PZX.

Frequently Asked Questions (FAQ)

A technician using a professional diagnostic tablet to program a vehicle immobilizer system.
Programming the immobilizer requires specialized equipment like the Honda Diagnostic System (HDS) or a locksmith's programming tool.
Do I absolutely have to program a replacement ECM?

Yes. Due to the factory immobilizer system, the car will not start with an unprogrammed ECM. The security light will typically flash, and the starter may or may not engage, but the engine will not run. This is a mandatory step.

Can I use an ECM from an earlier 2000-2005 S2000?

No. The 2006-2009 S2000 uses a Drive-By-Wire (DBW) throttle system, while earlier models use a mechanical throttle cable. The ECMs are fundamentally different and not interchangeable.

Where is the ECM located on my 2006-2009 S2000?

The ECM is located in the passenger footwell, under the carpet on the right-hand side, near the transmission tunnel and firewall.

Will a used ECM fix my car's problem for sure?

Not necessarily. It is critical to perform a thorough diagnosis first. Many issues that seem like an ECM problem can be caused by faulty sensors, damaged wiring, or poor ground connections. Replacing the ECM without proper diagnosis can be an expensive mistake if it doesn't solve the root problem.

The Most Common Signs of an ECU or Control Module Failure - (How To Diagnose ECU Problems)
The Most Common Signs of an ECU or Control Module Failure - (How To Diagnose ECU Problems)
S2000 ECU reset DIY
S2000 ECU reset DIY

Technical Specifications

OEM Part Numbers: 37820-PZX-A06 37820-PZX-A07 37820-PZX-A08 37820-PZX-A09 37820-PZX-A11 37820-PZX-A12 37820-PZX-A13 37820-PZX-A14 37820-PZX-A21

Controls Drive-By-Wire (DBW) throttle system. Integrated with factory immobilizer.

Wrenchy
Article researched & written by
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Meet Wrenchy → Updated Jul 25, 2026

The information in this article is provided for general reference and educational purposes only. Vehicle specifications, procedures, and part compatibility can vary by production date, trim level, and region. Always consult your vehicle's factory service manual and verify part numbers before purchasing or performing repairs. Safety-critical components such as airbags, seat belts, and braking systems should be installed by a qualified professional.

Year Coverage
This article covers the Eng/Motor Cont Mod for:
  • Honda S2000: 2006200720082009
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